Cookies are harmless. I have no idea how the whole "OMG DELETE YOUR COOKIES THEIR WATCHING EVERYTHING YOUR DOING" senario came from - but honestly there haven't been any exploits via cookies in a very long time. I'm pretty sure the last exploit was the ability to use doskey (Dos based keylogger). Since DOS hasn't been the foundation for windows based OS's since win 98/me, Its pretty safe to say that you won't be affected.
Let me explain what "Tracking" cookies do. Basicially everytime you see a popup or banner ad (Including the ones on runecrypt) you will get a cookie. Clicking the ad will give you a different cookie. In that way the ad company is able to track what ads you have clicked on (There by offering more of those style advertisements in hopes that you will click on more of them).
Most of the time cookies are good - and often necessary for the functionality for certain websites. Example: Disable your ability to accept cookies, then try to buy something online on any website that uses a shopping cart - or use paypal to check out. It simply won't work at all with cookies disabled.
But yeah, if you REALLLY want to make it so spybot stops flagging that cookie - then you will have to follow robs advice and add that cookie to your black list. Of course - since the cookie in question is from ad.yeildmanager (Banner/popup ad source) I'm sure another one will simply take its place.